Olly Stone out with stress fracture, George Garton drafted in for England's ODIs against Sri Lanka.
Wiaan Mulder picked up 3 for 1, and Keshav Maharaj, Kagiso Rabada and Lungi Ngidi took two each to give South Africa a lead of 149.
Kohli and Rahane build platform for India after solid start against New Zealand in WTC final.
Dean Elgar led from the front with a stoical 77 runs to see his side to 218 for five wickets at stump on first day.
Incessant rain forced to called for first day, a reserve sixth day will come into play now if needed.
India announced their XI on the eve of the final, pick Ashwin, Jadeja for ICC World Test Championship final.
Warner, Cummins and Maxwell among six to opt out of West Indies and Bangladesh tours.
David Willey have been picked for T20I squad for the three-match series against Sri Lanka starting on June 23.
Trent Boult ends England innings with first ball of morning to set up 1-0 win.
England slip towards defeat against New Zealand on day three of the second Test at Edgbaston.